1. Know your three main types
Polysulphide (the traditional brown or white 'boat life' type): slow curing, flexible for years, sticks well to wood and is the classic choice for deck seams and bedding on wooden boats.
Polyurethane: much stronger and more adhesive — a sealant and a glue in one. Excellent below the waterline and on hull joints, but fittings bedded with it can be very hard to remove later.
Butyl tape: never fully cures, stays soft, and is ideal for deck fittings, windows and hatches you expect to take off again. Not for underwater seams.
2. Match the sealant to the job
Deck seams between planks: polysulphide or a dedicated deck seam compound over a primer.
Bedding cleats, rails and fittings: butyl for removable items, polysulphide for a longer-term seal.
Structural joints, keel beds and anything below the waterline that must not move: polyurethane.
Never use household silicone on a boat — it adheres poorly, fails in UV, and its residue stops every other sealant and coating from bonding afterwards.
3. Prepare the joint
Scrape out all old compound back to clean wood. New sealant will not bond to old, failed sealant.
The joint must be dry. Damp wood under fresh sealant is rot sealed in, not water sealed out.
Degrease the surfaces with acetone or white spirit and let it flash off fully before applying anything.
4. Apply and tool the bead
Mask both sides of the joint for a clean line. Cut the nozzle to slightly less than the seam width and push the bead ahead of the gun so the sealant is forced into the joint, not just laid on top.
Tool the bead once with a wetted plastic spreader or a gloved finger dipped in soapy water. Pull the masking tape while the sealant is still soft for a crisp edge.
5. Respect the cure time
Polysulphide can take one to two weeks to cure fully — fine for a boat laid up, but do not launch early.
Polyurethane skins over in hours but needs several days for full cure. Check the datasheet before painting over any sealant: some need to cure completely first, and some finishes will not stick to them at all.
Common mistakes
Using polyurethane where the fitting will need removing — you may tear out wood fibres getting it off.
Filling a seam too deep in one pass; deep seams need a backing rod or multiple layers.
Sealing over damp timber or old compound, which guarantees an early failure.